FUNCTION KEYWORDS & INPUT REQUIREMENTS The sequence of function keywords determines the sequence of running options. For simplicity, all input should include cell, symmetry, number_wavelength, group and resolution. Optional global parameters include print, list. ABSOLUTE (B. Weis/H. Wu): Calculate expected signal, absolute rmsF and relative scales among the different wavelengths. obligatory: infile, name, fp, fpp, scat, copy, bover, sequence ANOMERGE (H. Wu/M. Cuff): Bijevot differences are averaged among data from all the wavelengths for calculating Bijevot difference patterson. obligatory: infile, fpp optional: outfile, fcut, rmsdel, anocut ANORES (W. Hendrickson): Calculate anomalous signals present in data of each wavelength. obligatory: infile optional: shell, anocut, fcut ANOSCL (W. Hendrickson/B. Weis/H. Wu): Parameterized anisotropic localing scaling is performed to reduce noises in Bijevot difference. obligatory: infile, local optional: outfile, dffcut, anocut, rmsdel, fcut ASLSQ (W. Hendrickson/H. Wu): Refine anomalous scatterer sites against fa. obligatory: infile, scat, atom, refine optional: outfile, cycles, cutoffs(facut, famax, pmax), shell, fcscale, weighting F2ANO (H. Wu/B. Weis): Observations related by a certain data collection geomoetry are paired. In addition, symmetry and centric/acentric codes are calculated and intensities changed into amplitudes. obligatory: infile, mirror/inverse/random, batch_group, format optional: outfile FA: FA consists of a series of functions to generating fa: F2ANO,ANOSCL, WVLSCL,MADLSQ AND MERGIT. MADABCD (H. Wu/Ano Paler): Calculating Hendrickson/Lattman phase coefficients based on anomalous scatterer model. This is not only useful for phase combination but should also prove superior to madfaz in generating protein phases in that it generally phases more reflections and gives more realistic figure of merit. obligatory: infile, scat, fp, fpp, fcscale, atom optional: outfile, xplor, cutoffs(facut, fzcut, faflag, fcut, famax, fzmax, famin, pmax, qmax), shell, franges, mode, nstep, step, anoblock, block MADFAZ (W. Hendrickson/H. Wu): Phiz is calculated from Delphi and Phia from input anomalous scatterer model to complete MAD phasing by outputing FZ, Phiz, fom. obligatory: infile, scat, fcscale, atom optional: outfile, xplor, output, cutoffs(famax, famin, acut) f.o.m = cos(sigma(phi)) f.o.m = 0.0 for those reflections with FA > famx or fa < famin f.o.m = min(f.o.m, fa/sa/acut) for those reflections with FA < acut*sa MADLSQ (W. Hendrickson/B. Weis/H. Wu): Least-squares solutions to the MAD equation are performed for each observation, where FA, Delphi and FZ are derived. obligatory: infile, scat, fp, fpp, scale, fit optional: outfile, output, linear, anoblock, block, iteration, skcut, cutoffs(famax, fzmax, facut, fzcut, pmax, qmax) MERGIT (J. Smith/H. Wu): Individual observations are merged to give weighted FA, Delphi, FZ. obligatory: infile optional: outfile, xplore, shell, cutoffs(famax, facut, fzcut, pmax, qmax) PHASE: Also know as MADABCD. WVLSCL (J. Smith/H. Wu): Overall and parameterized anisotropic local scaling are performed between data from different wavelengths. obligatory: infile, absf, wave_local optional: cutoffs(fcut, rmsdel, dispcut), observations